Topic: startCTFS

Topic Description:

This function sources all the R files to create the object CTFSRPackage.rdata. It is used in the automated process to create the downloadable package, and is not intended for other use.



File: startCTFS/startCTFS.r

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Function: startCTFS

Function Description: startCTFS

Function to source all components of CTFS R package. Load all CTFS packages into a folder, then when opening R, execute this function, passing the folder name.

Function Arguments:

ArgumentDefault Value
folder

Function Source:

startCTFS=function(folder)
{
source(paste(folder,'/abundance/abundance.r',sep=''))
source(paste(folder,'/biomass/biomass.CTFSdb.r',sep=''))
source(paste(folder,'/demogchange/abund.fit.CTFS.r',sep=''))
source(paste(folder,'/demogchange/demogChange.r',sep=''))
source(paste(folder,'/growth/growth.r',sep=''))
source(paste(folder,'/growth/growthfit.bin.r',sep=''))
source(paste(folder,'/growth/growthfit.graph.r',sep=''))
source(paste(folder,'/map/map.r',sep=''))
source(paste(folder,'/map/mapresponse.r',sep=''))
source(paste(folder,'/mortality/mortality.r',sep=''))
source(paste(folder,'/recruitment/recruitment.r',sep=''))
source(paste(folder,'/reproduction/contingency.r',sep=''))
source(paste(folder,'/spatial/NeighborDensityFun.r',sep=''))
source(paste(folder,'/spatial/RipUvK.r',sep=''))
source(paste(folder,'/spatial/block.analysis.r',sep=''))
source(paste(folder,'/spatial/quadfunc.r',sep=''))
source(paste(folder,'/spatial/slope.r',sep=''))
source(paste(folder,'/speciesarea/spparea.r',sep=''))
source(paste(folder,'/startCTFS/startCTFS.r',sep=''))
source(paste(folder,'/topography/imageJ.r',sep=''))
source(paste(folder,'/topography/slope.r',sep=''))
source(paste(folder,'/topography/solvetopo.r',sep=''))
source(paste(folder,'/utilities/calcalpha.r',sep=''))
source(paste(folder,'/utilities/distributions.r',sep=''))
source(paste(folder,'/utilities/geometry.r',sep=''))
source(paste(folder,'/utilities/lmerBayes.r',sep=''))
source(paste(folder,'/utilities/modelBayes.r',sep=''))
source(paste(folder,'/utilities/statistics.r',sep=''))
source(paste(folder,'/utilities/utilities.r',sep=''))
source(paste(folder,'/utilities/utilitiesCTFS.r',sep=''))
}